Detailed information of SNP:
|
SNP ID:
sf0717306775(Gbrowse)
Chromosome: chr07 Position: 17306775 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.84% | 44.16% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 332 | 3.01% | 96.99% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717306775 | G->A | LOC_Os07g29480(LOC_Os07g29480.1) | SNPs that introduce stop codons |