Detailed information of SNP:
|
SNP ID:
sf0717314981(Gbrowse)
Chromosome: chr07 Position: 17314981 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 69.02% | 30.98% |
| All Indica | 784 | 47.07% | 52.93% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 53.85% | 46.15% |
| Indica II | 209 | 29.67% | 70.33% |
| Indica Intermediate | 211 | 52.61% | 47.39% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717314981 | G->A | LOC_Os07g29490(LOC_Os07g29490.1) | Synonymous |