Detailed information of SNP:
|
SNP ID:
sf0717316750(Gbrowse)
Chromosome: chr07 Position: 17316750 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 55.74% | 44.26% |
| All Indica | 735 | 22.86% | 77.14% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 337 | 24.04% | 75.96% |
| Indica II | 203 | 17.24% | 82.76% |
| Indica Intermediate | 195 | 26.67% | 73.33% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717316750 | G->A | INTERGENIC | None |