Detailed information of SNP:
|
SNP ID:
sf0717318943(Gbrowse)
Chromosome: chr07 Position: 17318943 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 54.79% | 45.21% |
| All Indica | 780 | 91.28% | 8.72% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 362 | 93.65% | 6.35% |
| Indica II | 209 | 87.56% | 12.44% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717318943 | A->G | LOC_Os07g29500(LOC_Os07g29500.1) | INTRON |