Detailed information of SNP:
|
SNP ID:
sf0717327901(Gbrowse)
Chromosome: chr07 Position: 17327901 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.59% | 38.41% |
| All Indica | 799 | 34.67% | 65.33% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 38.13% | 61.87% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717327901 | T->C | INTERGENIC | None |