Detailed information of SNP:
|
SNP ID:
sf0717341664(Gbrowse)
Chromosome: chr07 Position: 17341664 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.80% | 34.20% |
| All Indica | 798 | 42.36% | 57.64% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717341664 | C->T | LOC_Os07g29540(LOC_Os07g29540.1) | INTRON |