Detailed information of SNP:
|
SNP ID:
sf0717351224(Gbrowse)
Chromosome: chr07 Position: 17351224 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 93.85% | 6.15% |
| All Indica | 764 | 88.87% | 11.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 355 | 80.28% | 19.72% |
| Indica II | 207 | 98.07% | 1.93% |
| Indica Intermediate | 202 | 94.55% | 5.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717351224 | G->A | LOC_Os07g29550(LOC_Os07g29550.1) | Non-Synonymous SNP |