Detailed information of SNP:
|
SNP ID:
sf0717361411(Gbrowse)
Chromosome: chr07 Position: 17361411 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1292 | 64.63% | 35.37% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 389 | 3.08% | 96.92% |
| Aus | 61 | 22.95% | 77.05% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 257 | 2.33% | 97.67% |
| Tropical Japonica | 74 | 5.41% | 94.59% |
| Japonica Intermediate | 58 | 3.45% | 96.55% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 34 | 67.65% | 32.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717361411 | A->G | INTERGENIC | None |