Detailed information of SNP:
|
SNP ID:
sf0717367192(Gbrowse)
Chromosome: chr07 Position: 17367192 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 797 | 94.35% | 5.65% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717367192 | C->T | LOC_Os07g29570(LOC_Os07g29570.1) | INTRON |