Detailed information of SNP:
|
SNP ID:
sf0717367406(Gbrowse)
Chromosome: chr07 Position: 17367406 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 93.53% | 6.47% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 472 | 81.36% | 18.64% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 73.16% | 26.84% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717367406 | G->C | LOC_Os07g29570(LOC_Os07g29570.1) | Non-Synonymous SNP |