Detailed information of SNP:
|
SNP ID:
sf0717368430(Gbrowse)
Chromosome: chr07 Position: 17368430 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.21% | 40.79% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717368430 | T->C | LOC_Os07g29570(LOC_Os07g29570.1) | Non-Synonymous SNP |