Detailed information of SNP:
|
SNP ID:
sf0717374253(Gbrowse)
Chromosome: chr07 Position: 17374253 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.48% | 44.52% |
| All Indica | 796 | 93.47% | 6.53% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717374253 | G->A | INTERGENIC | None |