Detailed information of SNP:
|
SNP ID:
sf0717375271(Gbrowse)
Chromosome: chr07 Position: 17375271 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.40% | 44.60% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717375271 | A->G | INTERGENIC | None |