Detailed information of SNP:
|
SNP ID:
sf0717376657(Gbrowse)
Chromosome: chr07 Position: 17376657 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.58% | 29.42% |
| All Indica | 795 | 53.58% | 46.42% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 50.13% | 49.87% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717376657 | C->A | INTERGENIC | None |