Detailed information of SNP:
|
SNP ID:
sf0717411499(Gbrowse)
Chromosome: chr07 Position: 17411499 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.27% | 39.73% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717411499 | A->G | LOC_Os07g29620(LOC_Os07g29620.1) | Synonymous |