Detailed information of SNP:
|
SNP ID:
sf0717419894(Gbrowse)
Chromosome: chr07 Position: 17419894 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1267 | 90.21% | 9.79% |
| All Indica | 667 | 83.51% | 16.49% |
| All Japonica | 483 | 98.34% | 1.66% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 355 | 88.45% | 11.55% |
| Indica II | 138 | 71.01% | 28.99% |
| Indica Intermediate | 174 | 83.33% | 16.67% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717419894 | G->A | INTERGENIC | None |