Detailed information of SNP:
|
SNP ID:
sf0717471310(Gbrowse)
Chromosome: chr07 Position: 17471310 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.16% | 39.84% |
| All Indica | 798 | 32.58% | 67.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 6.67% | 93.33% |
| Indica II | 212 | 66.98% | 33.02% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717471310 | C->A | INTERGENIC | None |