Detailed information of SNP:
|
SNP ID:
sf0717477022(Gbrowse)
Chromosome: chr07 Position: 17477022 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1297 | 91.90% | 8.10% |
| All Indica | 685 | 85.26% | 14.74% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 318 | 88.36% | 11.64% |
| Indica II | 179 | 82.12% | 17.88% |
| Indica Intermediate | 188 | 82.98% | 17.02% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717477022 | C->T | LOC_Os07g29730(LOC_Os07g29730.1) | Non-Synonymous SNP |