Detailed information of SNP:
|
SNP ID:
sf0717518781(Gbrowse)
Chromosome: chr07 Position: 17518781 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 68.43% | 31.57% |
| All Indica | 782 | 49.62% | 50.38% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 370 | 55.41% | 44.59% |
| Indica II | 204 | 36.76% | 63.24% |
| Indica Intermediate | 208 | 51.92% | 48.08% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717518781 | G->A | LOC_Os07g29794(LOC_Os07g29794.1) | INTRON |