Detailed information of SNP:
|
SNP ID:
sf0717521443(Gbrowse)
Chromosome: chr07 Position: 17521443 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.77% | 38.23% |
| All Indica | 796 | 39.45% | 60.55% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717521443 | C->A | INTERGENIC | None |