Detailed information of SNP:
|
SNP ID:
sf0717526961(Gbrowse)
Chromosome: chr07 Position: 17526961 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 92.07% | 7.93% |
| All Indica | 769 | 100.00% | 0.00% |
| All Japonica | 441 | 77.10% | 22.90% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 359 | 100.00% | 0.00% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 89.73% | 10.27% |
| Tropical Japonica | 86 | 44.19% | 55.81% |
| Japonica Intermediate | 63 | 63.49% | 36.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717526961 | C->T | LOC_Os07g29810(LOC_Os07g29810.1) | Non-Synonymous SNP |