Detailed information of SNP:
|
SNP ID:
sf0717538478(Gbrowse)
Chromosome: chr07 Position: 17538478 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.26% | 35.74% |
| All Indica | 795 | 42.14% | 57.86% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 374 | 52.14% | 47.86% |
| Indica II | 210 | 21.43% | 78.57% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717538478 | C->T | INTERGENIC | None |