Detailed information of SNP:
|
SNP ID:
sf0717572283(Gbrowse)
Chromosome: chr07 Position: 17572283 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1351 | 97.48% | 2.52% |
| All Indica | 789 | 99.87% | 0.13% |
| All Japonica | 447 | 92.62% | 7.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 98.37% | 1.63% |
| Tropical Japonica | 81 | 71.60% | 28.40% |
| Japonica Intermediate | 60 | 91.67% | 8.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717572283 | T->C | INTERGENIC | None |