Detailed information of SNP:
|
SNP ID:
sf0717600064(Gbrowse)
Chromosome: chr07 Position: 17600064 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 97.51% | 2.49% |
| All Indica | 786 | 96.31% | 3.69% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717600064 | T->C | INTERGENIC | None |