Detailed information of SNP:
|
SNP ID:
sf0717633277(Gbrowse)
Chromosome: chr07 Position: 17633277 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 82.88% | 17.12% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 470 | 62.77% | 37.23% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 317 | 61.83% | 38.17% |
| Tropical Japonica | 88 | 60.23% | 39.77% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717633277 | A->G | INTERGENIC | None |