Detailed information of SNP:
|
SNP ID:
sf0717668069(Gbrowse)
Chromosome: chr07 Position: 17668069 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 798 | 40.73% | 59.27% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 210 | 47.14% | 52.86% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717668069 | T->C | INTERGENIC | None |