Detailed information of SNP:
|
SNP ID:
sf0717725126(Gbrowse)
Chromosome: chr07 Position: 17725126 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 91.71% | 8.29% |
| All Indica | 769 | 85.18% | 14.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 357 | 83.19% | 16.81% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717725126 | C->A | LOC_Os07g30050(LOC_Os07g30050.1) | Non-Synonymous SNP |