Detailed information of SNP:
|
SNP ID:
sf0717725974(Gbrowse)
Chromosome: chr07 Position: 17725974 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 95.09% | 4.91% |
| All Indica | 745 | 91.28% | 8.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 336 | 93.15% | 6.85% |
| Indica II | 210 | 84.29% | 15.71% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717725974 | T->C | INTERGENIC | None |