Detailed information of SNP:
|
SNP ID:
sf0717726333(Gbrowse)
Chromosome: chr07 Position: 17726333 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 90.01% | 9.99% |
| All Indica | 765 | 82.22% | 17.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 354 | 75.71% | 24.29% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 202 | 88.61% | 11.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717726333 | T->C | INTERGENIC | None |