Detailed information of SNP:
|
SNP ID:
sf0717726684(Gbrowse)
Chromosome: chr07 Position: 17726684 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 93.67% | 6.33% |
| All Indica | 787 | 89.83% | 10.17% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 365 | 89.59% | 10.41% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717726684 | C->T | INTERGENIC | None |