Detailed information of SNP:
|
SNP ID:
sf0717734602(Gbrowse)
Chromosome: chr07 Position: 17734602 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1278 | 77.31% | 22.69% |
| All Indica | 676 | 61.39% | 38.61% |
| All Japonica | 486 | 97.53% | 2.47% |
| Aus | 62 | 85.48% | 14.52% |
| Indica I | 318 | 78.30% | 21.70% |
| Indica II | 175 | 36.57% | 63.43% |
| Indica Intermediate | 183 | 55.74% | 44.26% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717734602 | G->A | LOC_Os07g30070(LOC_Os07g30070.1) | INTRON |