Detailed information of SNP:
|
SNP ID:
sf0717837205(Gbrowse)
Chromosome: chr07 Position: 17837205 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 68.93% | 31.07% |
| All Indica | 798 | 52.76% | 47.24% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 79.68% | 20.32% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717837205 | C->G | LOC_Os07g30190(LOC_Os07g30190.1) | Non-Synonymous SNP |