Detailed information of SNP:
|
SNP ID:
sf0717885293(Gbrowse)
Chromosome: chr07 Position: 17885293 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.67% | 36.33% |
| All Indica | 797 | 53.45% | 46.55% |
| All Japonica | 496 | 76.61% | 23.39% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 79.89% | 20.11% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 334 | 67.66% | 32.34% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717885293 | T->A | LOC_Os07g30250(LOC_Os07g30250.1) | INTRON |