Detailed information of SNP:
|
SNP ID:
sf0717899565(Gbrowse)
Chromosome: chr07 Position: 17899565 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.23% | 6.77% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717899565 | C->T | INTERGENIC | None |