Detailed information of SNP:
|
SNP ID:
sf0717917992(Gbrowse)
Chromosome: chr07 Position: 17917992 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 77.20% | 22.80% |
| All Indica | 759 | 68.77% | 31.23% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 363 | 85.95% | 14.05% |
| Indica II | 200 | 46.50% | 53.50% |
| Indica Intermediate | 196 | 59.69% | 40.31% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717917992 | A->T | LOC_Os07g30310(LOC_Os07g30310.1) | INTRON |