Detailed information of SNP:
|
SNP ID:
sf0718003914(Gbrowse)
Chromosome: chr07 Position: 18003914 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 65.73% | 34.27% |
| All Indica | 794 | 97.86% | 2.14% |
| All Japonica | 468 | 17.09% | 82.91% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 320 | 11.56% | 88.44% |
| Tropical Japonica | 86 | 30.23% | 69.77% |
| Japonica Intermediate | 62 | 27.42% | 72.58% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718003914 | A->C | INTERGENIC | None |