Detailed information of SNP:
|
SNP ID:
sf0718006289(Gbrowse)
Chromosome: chr07 Position: 18006289 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.44% | 27.56% |
| All Indica | 796 | 58.79% | 41.21% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 212 | 22.17% | 77.83% |
| Indica Intermediate | 209 | 57.42% | 42.58% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718006289 | T->A | INTERGENIC | None |