Detailed information of SNP:
|
SNP ID:
sf0718024855(Gbrowse)
Chromosome: chr07 Position: 18024855 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 97.10% | 2.90% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718024855 | T->G | LOC_Os07g30460(LOC_Os07g30460.1) | Non-Synonymous SNP |