Detailed information of SNP:
|
SNP ID:
sf0718050709(Gbrowse)
Chromosome: chr07 Position: 18050709 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 72.64% | 27.36% |
| All Indica | 799 | 58.95% | 41.05% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718050709 | C->T | INTERGENIC | None |