Detailed information of SNP:
|
SNP ID:
sf0718104506(Gbrowse)
Chromosome: chr07 Position: 18104506 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.26% | 47.74% |
| All Indica | 799 | 84.11% | 15.89% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718104506 | A->G | INTERGENIC | None |