Detailed information of SNP:
|
SNP ID:
sf0718106299(Gbrowse)
Chromosome: chr07 Position: 18106299 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.08% | 33.92% |
| All Indica | 795 | 47.80% | 52.20% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 26.74% | 73.26% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718106299 | G->A | LOC_Os07g30600(LOC_Os07g30600.1) | INTRON |