Detailed information of SNP:
SNP ID:
sf0718106307(Gbrowse)
Chromosome: chr07 Position: 18106307 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 62.67% | 37.33% |
All Indica | 797 | 41.78% | 58.22% |
All Japonica | 497 | 93.76% | 6.24% |
Aus | 67 | 67.16% | 32.84% |
Indica I | 374 | 25.40% | 74.60% |
Indica II | 213 | 72.77% | 27.23% |
Indica Intermediate | 210 | 39.52% | 60.48% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 78.72% | 21.28% |
Japonica Intermediate | 68 | 86.76% | 13.24% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0718106307 | C->T | LOC_Os07g30600(LOC_Os07g30600.1) | INTRON |