Detailed information of SNP:



SNP ID: sf0718106307(Gbrowse)

Chromosome: chr07

Position: 18106307
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 62.67% 37.33%
All Indica797 41.78% 58.22%
All Japonica497 93.76% 6.24%
Aus67 67.16% 32.84%
Indica I374 25.40% 74.60%
Indica II213 72.77% 27.23%
Indica Intermediate210 39.52% 60.48%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 78.72% 21.28%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0718106307 C->T LOC_Os07g30600(LOC_Os07g30600.1) INTRON