Detailed information of SNP:
|
SNP ID:
sf0718106380(Gbrowse)
Chromosome: chr07 Position: 18106380 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 62.92% | 37.08% |
| All Indica | 793 | 41.87% | 58.13% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 371 | 25.61% | 74.39% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 209 | 39.71% | 60.29% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718106380 | T->C | LOC_Os07g30600(LOC_Os07g30600.1) | INTRON |