Detailed information of SNP:
|
SNP ID:
sf0718111116(Gbrowse)
Chromosome: chr07 Position: 18111116 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 51.42% | 48.58% |
| All Indica | 790 | 76.71% | 23.29% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 366 | 72.13% | 27.87% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718111116 | A->G | INTERGENIC | None |