Detailed information of SNP:
|
SNP ID:
sf0718116895(Gbrowse)
Chromosome: chr07 Position: 18116895 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 54.35% | 45.65% |
| All Indica | 795 | 22.89% | 77.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 372 | 26.88% | 73.12% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 210 | 26.19% | 73.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718116895 | T->C | INTERGENIC | None |