Detailed information of SNP:
|
SNP ID:
sf0718116898(Gbrowse)
Chromosome: chr07 Position: 18116898 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.95% | 35.05% |
| All Indica | 799 | 45.43% | 54.57% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 29.60% | 70.40% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718116898 | C->T | INTERGENIC | None |