Detailed information of SNP:
SNP ID:
sf0718132725(Gbrowse)
Chromosome: chr07 Position: 18132725 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1408 | 57.17% | 42.83% |
All Indica | 790 | 77.09% | 22.91% |
All Japonica | 496 | 23.59% | 76.41% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 372 | 73.39% | 26.61% |
Indica II | 209 | 86.12% | 13.88% |
Indica Intermediate | 209 | 74.64% | 25.36% |
Temperate Japonica | 334 | 32.04% | 67.96% |
Tropical Japonica | 94 | 7.45% | 92.55% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0718132725 | A->G | LOC_Os07g30640(LOC_Os07g30640.1) | INTRON |