Detailed information of SNP:



SNP ID: sf0718132725(Gbrowse)

Chromosome: chr07

Position: 18132725
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1408 57.17% 42.83%
All Indica790 77.09% 22.91%
All Japonica496 23.59% 76.41%
Aus67 97.01% 2.99%
Indica I372 73.39% 26.61%
Indica II209 86.12% 13.88%
Indica Intermediate209 74.64% 25.36%
Temperate Japonica334 32.04% 67.96%
Tropical Japonica94 7.45% 92.55%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 21.43% 78.57%
Intermediate41 26.83% 73.17%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0718132725 A->G LOC_Os07g30640(LOC_Os07g30640.1) INTRON