Detailed information of SNP:
|
SNP ID:
sf0718138754(Gbrowse)
Chromosome: chr07 Position: 18138754 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 94.99% | 5.01% |
| All Indica | 794 | 95.59% | 4.41% |
| All Japonica | 471 | 94.69% | 5.31% |
| Aus | 56 | 89.29% | 10.71% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 76 | 78.95% | 21.05% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718138754 | G->T | LOC_Os07g30650(LOC_Os07g30650.1) | SNPs that introduce stop codons |