Detailed information of SNP:
|
SNP ID:
sf0718143992(Gbrowse)
Chromosome: chr07 Position: 18143992 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 71.53% | 28.47% |
| All Indica | 794 | 52.27% | 47.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 370 | 32.70% | 67.30% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718143992 | G->A | INTERGENIC | None |