Detailed information of SNP:
|
SNP ID:
sf0718146958(Gbrowse)
Chromosome: chr07 Position: 18146958 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.91% | 42.09% |
| All Indica | 796 | 44.47% | 55.53% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 28.76% | 71.24% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718146958 | T->C | INTERGENIC | None |